Harambee Stars home-based players edged out visiting South Sudan 1-0 in a friendly played at Nyayo Stadium on Saturday.
AFC Leopards danger-man Elvis Rupia opened his account for the national side, netting the winner in the 76th minute.
Read: Official: Harambee Stars Winger Ayub Timbe Joins Japanese Side Vissel Kobe
Both sides used the warm-up to sharpen ahead of resumption of the 2022 Africa Cup of Nations qualifiers later this month where Kenya will host Egypt before travelling to Togo for their final group game.
Kenya will next face Tanzania in another friendly on Wednesday.
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